The rutgersMap database was created from Rutgers Combined Linkage-Phsycal Map1. The current version contains interpolated genetic positions for variants from dbSNP build 134. It is also possible to provide a list of variants with physical positions to the Rutgers Map Interpolator and create your own annotation database using the rutgersMap format with
--file option for
vtools use command.
Description of the data from Rutgers Computational Genetics Lab:
% vtools show annotation rutgersMap -v2
Annotation database rutgersMap (version b134) Description: Rutgers Combined Linkage-Physical Map Database type: position Reference genome hg19: chr, position chr position one-based position in chromosome cm_avg map distance (cM), averaged cm_female map distance (cM), female cm_male map distance (cM), male
1 T. C. Matise, F. Chen, W. Chen, F. M. De La Vega, M. Hansen, C. He, F. C.L. Hyland, G. C. Kennedy, X. Kong, S. S. Murray, J. S. Ziegle, W. C.L. Stewart and S. Buyske (2007). A second-generation combined linkage physical map of the human genome. Genome Research ⇑